Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs17044017 chr3:6012847 C/T 1.29E-8 119 12.63 44.75 39.75 KM Plot
THYM rs17064 chr7:87133470 T/A 4.07E-6 116 42.82 29.75 NA KM Plot
THYM rs17082538 chr5:92090937 A/G 0 115 37.13 50.13 4.13 KM Plot
THYM rs17109783 chr14:40230628 T/C 4.0E-6 119 41.22 42.73 23.63 KM Plot
THYM rs17109789 chr14:40233985 A/T 4.0E-6 119 41.22 42.73 23.63 KM Plot
THYM rs17119571 chr12:53219945 A/T 0 117 38.83 96.37 2.9 KM Plot
THYM rs17120038 chr12:58344857 A/G 5.9E-13 119 42.25 32.72 6 KM Plot
THYM rs17120203 chr12:58345606 T/C 9.59E-13 117 42.73 27.3 6 KM Plot
THYM rs1712438 chr15:42338621 A/G 0.000154 116 41.22 60.13 28.43 KM Plot
THYM rs17128235 chr8:19199688 C/T 9.97E-5 119 12.77 45.87 40.3 KM Plot
THYM rs17128236 chr8:19199797 T/C 9.97E-5 119 40.3 45.87 12.77 KM Plot
THYM rs17136341 chr6:3266832 C/G 0 118 4.13 42.73 38.58 KM Plot
THYM rs17136343 chr6:3266870 A/G 0 118 4.13 42.73 38.58 KM Plot
THYM rs17136345 chr6:3266908 G/A 0 118 4.13 42.73 38.58 KM Plot
THYM rs17136346 chr6:3266915 A/C 0 118 4.13 42.73 38.58 KM Plot